Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PATZ1

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

dev stage
embryonic
cell line
HEK293
sex
female
sample type
immortalized cell line
donor ID
ENCDO000ABF
age
unknown
health state
unknown
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0994a79b-44ae-49ef-a44c-6b2ebf85a230/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse%20%28modified%20for%20HEK293%20GFP-ZNF%29.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
29911984
Reads aligned (%)
97.6
Duplicates removed (%)
0.7
Number of peaks
17764 (qval < 1E-05)

hg19

Number of total reads
29911984
Reads aligned (%)
97.1
Duplicates removed (%)
0.7
Number of peaks
17355 (qval < 1E-05)

Base call quality data from DBCLS SRA